69 constexpr dna5() noexcept = default;
70 constexpr
dna5(
dna5 const &) noexcept = default;
72 constexpr
dna5 & operator=(
dna5 const &) noexcept = default;
73 constexpr
dna5 & operator=(
dna5 &&) noexcept = default;
74 ~
dna5() noexcept = default;
86 constexpr
dna5(t const & r) noexcept
165inline namespace literals
182constexpr dna5 operator""_dna5(
char const c)
noexcept
201 for (
size_t i = 0; i < n; ++i)
202 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:163
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:199
constexpr dna5 & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition: alphabet_base.hpp:187
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition: alphabet_base.hpp:261
The five letter DNA alphabet of A,C,G,T and the unknown character N..
Definition: dna5.hpp:51
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition: dna5.hpp:127
constexpr dna5() noexcept=default
Defaulted.
static constexpr rank_type rank_complement_table[alphabet_size]
The rank complement table.
Definition: dna5.hpp:97
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition: dna5.hpp:112
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition: dna5.hpp:94
static constexpr rank_type rank_complement(rank_type const rank)
Returns the complement by rank.
Definition: dna5.hpp:106
friend base_t
Befriend seqan3::nucleotide_base.
Definition: dna5.hpp:57
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition: dna5.hpp:118
friend rna5
Befriend seqan3::rna5 so it can copy char_to_rank.
Definition: dna5.hpp:63
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:43
alphabet_base< dna5, size, char > base_t
Type of the base class.
Definition: nucleotide_base.hpp:46
The five letter RNA alphabet of A,C,G,U and the unknown character N..
Definition: rna5.hpp:49
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:83
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.